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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 15 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AR110602.1 emblrelpat Sequence 9 from patent US 6114608. 7378 bp unidentified QT-CON-00-006 127 bp View
AR151001.1 emblrelpat Sequence 9 from patent US 6229075. 7378 bp unidentified QT-CON-00-006 127 bp View
AR152424.1 emblrelpat Sequence 9 from patent US 6232533. 7378 bp unidentified QT-CON-00-006 127 bp View
AR152433.1 emblrelpat Sequence 9 from patent US 6232534. 7378 bp unidentified QT-CON-00-006 127 bp View
AR184317.1 emblrelpat Sequence 9 from patent US 6342660. 7378 bp unidentified QT-CON-00-006 127 bp View
AR212558.1 emblrelpat Sequence 9 from patent US 6399860. 7378 bp unidentified QT-CON-00-006 127 bp View
AR342206.1 emblrelpat Sequence 9 from patent US 6573438. 7378 bp unidentified QT-CON-00-006 127 bp View
BD014471.1 emblrelpat JP 2001136983-A/13: Transgenic corn... 1226 bp synthetic construct QT-CON-00-006 127 bp View
BD170161.1 emblrelpat WO 2002034943-A/74: Method of quant... 1071 bp synthetic construct QT-CON-00-006 127 bp View
BD295580.1 emblrelpat WO 2003027283-A/21: Nucleic acid fr... 1135 bp synthetic construct QT-CON-00-006 127 bp View
GX183322.1 emblrelpat Sequence 74 from patent US 7709232. 1071 bp unidentified QT-CON-00-006 127 bp View
NRN_AR110602 nrnl1 Sequence 9 from patent US 6114608. ... 7378 bp unidentified QT-CON-00-006 127 bp View
NRN_BD014471 nrnl1 Transgenic corn and method of detec... 1226 bp unidentified QT-CON-00-006 127 bp View
NRN_BD170161 nrnl1 Method of quantifying gene modifica... 1071 bp unidentified QT-CON-00-006 127 bp View
NRN_BD295580 nrnl1 Nucleic acid fragment for competiti... 1135 bp unidentified QT-CON-00-006 127 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.