Match details
| Record ID: |
AR184317.1 |
| Database: |
emblrelpat |
Go to original record |
| Description: |
Sequence 9 from patent US 6342660. |
| Taxon: |
unidentified |
| Original size: |
7378 bp |
| Patents: |
US6342660 (lens, espacenet)
|
View other 32 matches for this record
| Method: |
QT-CON-00-006 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
|
| Description: | Quantitative PCR method for detection of the junction between the intron 6 from maize alcohol dehydrogenase 1 gene and the synthetic cry1A(b) gene. |
| Target: | IVS6-cryIAb |
View other 14 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
983 |
1109 |
+ |
127 bp |
|
1 aaaagaccac aacaagccgc ggatcctcta gagtcgacca tggacaacaa
51 cccaaacatc aacgaatgca ttccatacaa ctgcttgagt aacccagaag
101 ttgaagtact tggtggagaa cgcattg
View other 14 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
6.42e-09 |
| primerB |
100.0 |
23 bp |
0 |
0 |
127 |
105 |
1.55e-10 |
| probe |
100.0 |
27 bp |
0 |
0 |
35 |
61 |
1.14e-12 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
