European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 14 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY326434.1 nt Synthetic construct truncated CRYIA... 4180 bp synthetic construct QT-CON-00-004 113 bp View
BD014473.1 emblrelpat JP 2001136983-A/15: Transgenic corn... 1416 bp synthetic construct QT-CON-00-004 113 bp View
BD170160.1 emblrelpat WO 2002034943-A/73: Method of quant... 1102 bp synthetic construct QT-CON-00-004 113 bp View
BD170161.1 emblrelpat WO 2002034943-A/74: Method of quant... 1071 bp synthetic construct QT-CON-00-004 113 bp View
BD295580.1 emblrelpat WO 2003027283-A/21: Nucleic acid fr... 1135 bp synthetic construct QT-CON-00-004 113 bp View
DI201809.1 emblrelpat KR 1020110126306-A/49: A method for... 3350 bp artificial sequences QT-CON-00-004 113 bp View
DI435809.1 emblrelpat KR 1020140135575-A/1: Standard Plas... 6922 bp synthetic construct QT-CON-00-004 113 bp View
GX183321.1 emblrelpat Sequence 73 from patent US 7709232. 1102 bp unidentified QT-CON-00-004 113 bp View
GX183322.1 emblrelpat Sequence 74 from patent US 7709232. 1071 bp unidentified QT-CON-00-004 113 bp View
KH534086.1 emblrelpat Sequence 13 from patent US 9562267. 6922 bp unidentified QT-CON-00-004 113 bp View
NRN_BD014473 nrnl1 Transgenic corn and method of detec... 1416 bp unidentified QT-CON-00-004 113 bp View
NRN_BD170160 nrnl1 Method of quantifying gene modifica... 1102 bp unidentified QT-CON-00-004 113 bp View
NRN_BD170161 nrnl1 Method of quantifying gene modifica... 1071 bp unidentified QT-CON-00-004 113 bp View
NRN_BD295580 nrnl1 Nucleic acid fragment for competiti... 1135 bp unidentified QT-CON-00-004 113 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.