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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF440535.1 nt Picea breweriana from USA tRNA-Thr ... 1434 bp Picea breweriana QL-PLN-00-007 562 bp View
EF440536.1 nt Picea chihuahuana from Mexico tRNA-... 1434 bp Picea chihuahuana QL-PLN-00-007 562 bp View
EF440537.1 nt Picea crassifolia from China tRNA-T... 1434 bp Picea crassifolia QL-PLN-00-007 562 bp View
EF440538.1 nt Picea engelmannii from Canada tRNA-... 1435 bp Picea engelmannii QL-PLN-00-007 562 bp View
EF440539.1 nt Picea farreri from Myanmar tRNA-Thr... 1429 bp Picea farreri QL-PLN-00-007 562 bp View
EF440540.1 nt Picea glauca from Canada tRNA-Thr (... 1435 bp Picea glauca QL-PLN-00-007 562 bp View
EF440541.1 nt Picea glauca from Canada tRNA-Thr (... 1435 bp Picea glauca QL-PLN-00-007 562 bp View
EF440542.1 nt Picea glauca from Canada tRNA-Thr (... 1435 bp Picea glauca QL-PLN-00-007 562 bp View
EF440543.1 nt Picea glehnii from Japan tRNA-Thr (... 1428 bp Picea glehnii QL-PLN-00-007 562 bp View
EF440544.1 nt Picea jezoensis from Japan tRNA-Thr... 1434 bp Picea jezoensis QL-PLN-00-007 562 bp View
EF440545.1 nt Picea koraiensis from China tRNA-Th... 1434 bp Picea koraiensis QL-PLN-00-007 562 bp View
EF440548.1 nt Picea mariana from USA tRNA-Thr (tr... 1434 bp Picea mariana QL-PLN-00-007 562 bp View
EF440549.1 nt Picea martinezii from Mexico tRNA-T... 1434 bp Picea martinezii QL-PLN-00-007 562 bp View
EF440551.1 nt Picea mexicana from Mexico tRNA-Thr... 1435 bp Picea mexicana QL-PLN-00-007 562 bp View
EF440552.1 nt Picea meyeri from China tRNA-Thr (t... 1434 bp Picea meyeri QL-PLN-00-007 562 bp View
EF440554.1 nt Picea morrisonicola from Taiwan tRN... 1434 bp Picea morrisonicola QL-PLN-00-007 562 bp View
EF440556.1 nt Picea omorika tRNA-Thr (trnT) gene,... 1434 bp Picea omorika QL-PLN-00-007 562 bp View
EF440557.1 nt Picea orientalis from Georgia tRNA-... 1434 bp Picea orientalis QL-PLN-00-007 562 bp View
EF440558.1 nt Pinus banksiana tRNA-Thr (trnT) gen... 1468 bp Pinus banksiana QL-PLN-00-007 560 bp View
EF440560.1 nt Picea pungens from USA tRNA-Thr (tr... 1434 bp Picea pungens QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.