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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
BK010673.1 nt TPA: Miscanthus sinensis chloroplas... 141293 bp Miscanthus sinensis QL-PLN-00-007 526 bp View
BK010674.1 nt TPA: Miscanthus sacchariflorus chlo... 141361 bp Miscanthus sacchariflorus QL-PLN-00-007 526 bp View
BK010675.1 nt TPA: Miscanthus floridulus chloropl... 141264 bp Miscanthus floridulus QL-PLN-00-007 526 bp View
BK010677.1 nt TPA: Saccharum hybrid cultivar B436... 141172 bp Saccharum hybrid cultivar B4362 QL-PLN-00-007 526 bp View
BK010737.1 nt TPA: Nicotiana knightiana chloropla... 155963 bp Nicotiana knightiana QL-PLN-00-007 572 bp View
BK010738.1 nt TPA: Nicotiana rustica chloroplast,... 155850 bp Nicotiana rustica QL-PLN-00-007 572 bp View
BK010739.1 nt TPA: Nicotiana obtusifolia chloropl... 156022 bp Nicotiana obtusifolia QL-PLN-00-007 571 bp View
BK010740.1 nt TPA: Nicotiana glauca chloroplast, ... 155917 bp Nicotiana glauca QL-PLN-00-007 571 bp View
BK010741.1 nt TPA: Nicotiana paniculata chloropla... 155689 bp Nicotiana paniculata QL-PLN-00-007 572 bp View
BK061458.1 nt TPA_asm: Zea mays subsp. mexicana c... 140539 bp Zea mays subsp. mexicana QL-PLN-00-007 532 bp View
BK061459.1 nt TPA_asm: Zea mays subsp. mexicana c... 140495 bp Zea mays subsp. mexicana QL-PLN-00-007 532 bp View
BK061460.1 nt TPA_asm: Zea mays subsp. mexicana c... 140504 bp Zea mays subsp. mexicana QL-PLN-00-007 532 bp View
BK061461.1 nt TPA_asm: Zea mays subsp. mexicana c... 140537 bp Zea mays subsp. mexicana QL-PLN-00-007 532 bp View
BK061462.1 nt TPA_asm: Zea mays subsp. mexicana c... 140535 bp Zea mays subsp. mexicana QL-PLN-00-007 532 bp View
BK061463.1 nt TPA_asm: Zea mays subsp. parviglumi... 140462 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BK061464.1 nt TPA_asm: Zea mays subsp. parviglumi... 140370 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BK061465.1 nt TPA_asm: Zea mays subsp. parviglumi... 140463 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BK061466.1 nt TPA_asm: Zea mays subsp. parviglumi... 140369 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BK061467.1 nt TPA_asm: Zea mays subsp. parviglumi... 140461 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View
BK061468.1 nt TPA_asm: Zea mays subsp. parviglumi... 140454 bp Zea mays subsp. parviglumis QL-PLN-00-007 532 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.