European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP846044.1 nt Lycium barbarum var. auranticarpum ... 154978 bp Lycium barbarum var. auranticarpum QL-PLN-00-007 595 bp View
OP846045.1 nt Lycium sp. YD-2023a chloroplast, co... 154976 bp Lycium sp. YD-2023a QL-PLN-00-007 595 bp View
OP846050.1 nt Lycium ruthenicum chloroplast, comp... 154976 bp Lycium ruthenicum QL-PLN-00-007 595 bp View
OP856508.1 nt Pogostemon cablin isolate G1 chloro... 152463 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856509.1 nt Pogostemon cablin isolate G2 chloro... 152464 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856510.1 nt Pogostemon cablin isolate G3 chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856511.1 nt Pogostemon cablin isolate G4 chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856512.1 nt Pogostemon cablin isolate G5 chloro... 152462 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856513.1 nt Pogostemon cablin isolate G6 chloro... 152464 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856514.1 nt Pogostemon cablin isolate G7 chloro... 152462 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856515.1 nt Pogostemon cablin isolate G8 chloro... 152464 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP866962.1 nt Lycium ruthenicum chloroplast, comp... 155655 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
OP896210.1 nt Saccharum barberi isolate Nagas chl... 141174 bp Saccharum barberi QL-PLN-00-007 526 bp View
OP903121.1 nt Lantana camara chloroplast, complet... 154394 bp Lantana camara QL-PLN-00-007 569 bp View
OP903124.1 nt Verbena officinalis chloroplast, co... 153286 bp Verbena officinalis QL-PLN-00-007 553 bp View
OP963956.1 nt Filago arvensis voucher E.E. Yayhin... 151458 bp Filago arvensis QL-PLN-00-007 526 bp View
OP963959.1 nt Gamochaeta pensylvanica voucher Q.F... 151573 bp Gamochaeta pensylvanica QL-PLN-00-007 526 bp View
OP963962.1 nt Leontopodium andersonii voucher Q.F... 151068 bp Leontopodium andersonii QL-PLN-00-007 526 bp View
OP963964.1 nt Leontopodium artemisiifolium vouche... 151133 bp Leontopodium artemisiifolium QL-PLN-00-007 526 bp View
OP963966.1 nt Leontopodium calocephalum voucher Q... 151129 bp Leontopodium calocephalum QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.