Match details
Record ID: |
OP856508.1 |
Database: |
nt |
Go to original record |
Description: |
Pogostemon cablin isolate G1 chloroplast, complete genome. |
Taxon: |
Pogostemon cablin |
Original size: |
152463 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46854 |
47414 |
+ |
561 bp |
|
1 cgaaatcggt agacgctacg gacttaatta taattagatt gagccttggt
51 gtgggaaacc cactaagtga taactttcaa attcagagaa accccggaat
101 taataaaaat gggcgatcct gatccaaatc ctgttttctc aaaacaaagg
151 ttcagaaaaa gaaatcaaag gataggtgca gagactcaac ggaagccgtt
201 ctaacaaatg gagttgacta cgttggtaga ggaatccttt ccacggaaac
251 ttcagaaagg ataaacctat ctattgaata ctatatcaaa tgattaatga
301 tggcccgaat ctgtattttt gaatatgaaa aatggaagaa ttggtgtgaa
351 ttgattctac attgaagaaa aaatagaata ttcattcatc aaatcattca
401 ctccatagtc cgataaatct tttttttaaa gaactgatta atcggacgag
451 aataaagata gagtcccatt ctacatgtca ataccggcaa caatgaaatt
501 tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc
551 cctctatccc c
View other 11 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
561 |
542 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.