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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 561 bp 
1     cgaaatcggt agacgctacg gacttaatta taattagatt gagccttggt
51    gtgggaaacc cactaagtga taactttcaa attcagagaa accccggaat
101   taataaaaat gggcgatcct gatccaaatc ctgttttctc aaaacaaagg
151   ttcagaaaaa gaaatcaaag gataggtgca gagactcaac ggaagccgtt
201   ctaacaaatg gagttgacta cgttggtaga ggaatccttt ccacggaaac
251   ttcagaaagg ataaacctat ctattgaata ctatatcaaa tgattaatga
301   tggcccgaat ctgtattttt gaatatgaaa aatggaagaa ttggtgtgaa
351   ttgattctac attgaagaaa aaatagaata ttcattcatc aaatcattca
401   ctccatagtc cgataaatct tttttttaaa gaactgatta atcggacgag
451   aataaagata gagtcccatt ctacatgtca ataccggcaa caatgaaatt
501   tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc
551   cctctatccc c

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP856513.1 nt Pogostemon cablin isolate G6 chloro... 152464 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF445415.1 nt Pogostemon cablin isolate GY chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF445416.1 nt Pogostemon cablin isolate VT chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF445417.1 nt Pogostemon cablin isolate YN chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856508.1 nt Pogostemon cablin isolate G1 chloro... 152463 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856509.1 nt Pogostemon cablin isolate G2 chloro... 152464 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856510.1 nt Pogostemon cablin isolate G3 chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856511.1 nt Pogostemon cablin isolate G4 chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856512.1 nt Pogostemon cablin isolate G5 chloro... 152462 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856514.1 nt Pogostemon cablin isolate G7 chloro... 152462 bp Pogostemon cablin QL-PLN-00-007 561 bp View
OP856515.1 nt Pogostemon cablin isolate G8 chloro... 152464 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF287373.1 nt Pogostemon cablin isolate Hainan ch... 152462 bp Pogostemon cablin QL-PLN-00-007 561 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.