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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP235367.1 nt Saccharum spontaneum isolate SES561... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235368.1 nt Saccharum spontaneum isolate SES602... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235369.1 nt Saccharum spontaneum isolate Shoagu... 141222 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235370.1 nt Saccharum spontaneum isolate SLC92-... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235371.1 nt Saccharum spontaneum isolate SM7916... 141181 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235372.1 nt Saccharum spontaneum isolate Taiwan... 141162 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235373.1 nt Saccharum spontaneum isolate Tongza... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235374.1 nt Saccharum spontaneum isolate IND81-... 141165 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235375.1 nt Saccharum spontaneum isolate US48-6... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235376.1 nt Saccharum spontaneum isolate US56-1... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235377.1 nt Saccharum spontaneum isolate US60-0... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235378.1 nt Saccharum spontaneum isolate US78-5... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235379.1 nt Saccharum spontaneum isolate YNMZ c... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235380.1 nt Saccharum spontaneum isolate IND81-... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235381.1 nt Saccharum spontaneum isolate IND81-... 141188 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235382.1 nt Saccharum spontaneum isolate Iransp... 141162 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP236024.1 nt Phyllostachys edulis chloroplast, c... 139780 bp Phyllostachys edulis QL-PLN-00-007 614 bp View
OP242181.1 nt Brandisia cauliflora isolate 2 vouc... 154714 bp Brandisia cauliflora QL-PLN-00-007 557 bp View
OP243282.1 nt Primulina sp. ZYZ-2023b voucher WF2... 972 bp Primulina sp. ZYZ-2023b QL-PLN-00-007 552 bp View
OP243283.1 nt Primulina jiulianshanensis voucher ... 972 bp Primulina jiulianshanensis QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.