Match details
Record ID: |
OP242181.1 |
Database: |
nt |
Go to original record |
Description: |
Brandisia cauliflora isolate 2 voucher ChenZ-010 (KUN) plastid, complete genome. |
Taxon: |
Brandisia cauliflora |
Original size: |
154714 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47573 |
48129 |
+ |
557 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201 acaaatggag ttgattgcgc tgatagagga atgaaacttc agaaaggatg
251 aaggataaac gtatctattg aatactatat caaaatggtt gattaatgat
301 ggcccgaatc tgtatctgta tttttgaata cgaaaaatgg aagaattggt
351 gtgaattgat tccatattga agaaagaata ttcattcatc aaatcattca
401 ctccatagtc cgatagatct tttaaagaac tgattaatcg gacgagaata
451 aagatagagt cccattctac atgtcaatac cggcaacaat gaaatttata
501 gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt caagtccctc
551 tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
557 |
538 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.