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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP007390.1 nt Buddleja alternifolia chloroplast, ... 154280 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
OP007392.1 nt Buddleja candida chloroplast, compl... 154130 bp Buddleja candida QL-PLN-00-007 559 bp View
OP007393.1 nt Buddleja sp. GJ20 chloroplast, comp... 154141 bp Buddleja sp. GJ20 QL-PLN-00-007 559 bp View
OP007394.1 nt Buddleja davidii chloroplast, compl... 154113 bp Buddleja davidii QL-PLN-00-007 559 bp View
OP007396.1 nt Buddleja fallowiana chloroplast, co... 154130 bp Buddleja fallowiana QL-PLN-00-007 559 bp View
OP007398.1 nt Buddleja nivea chloroplast, complet... 154154 bp Buddleja nivea QL-PLN-00-007 559 bp View
OP007399.1 nt Buddleja paniculata chloroplast, co... 154272 bp Buddleja paniculata QL-PLN-00-007 559 bp View
OP007400.1 nt Buddleja paniculata chloroplast, co... 154412 bp Buddleja paniculata QL-PLN-00-007 559 bp View
OP007402.1 nt Buddleja yunnanensis chloroplast, c... 154221 bp Buddleja yunnanensis QL-PLN-00-007 559 bp View
OP007405.1 nt Buddleja sp. GJ33 chloroplast, comp... 154196 bp Buddleja sp. GJ33 QL-PLN-00-007 565 bp View
OP007406.1 nt Buddleja asiatica chloroplast, comp... 154222 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007407.1 nt Buddleja crispa chloroplast, comple... 154083 bp Buddleja crispa QL-PLN-00-007 559 bp View
OP007408.1 nt Buddleja alternifolia chloroplast, ... 154226 bp Buddleja alternifolia QL-PLN-00-007 559 bp View
OP007410.1 nt Buddleja asiatica chloroplast, comp... 154209 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007411.1 nt Buddleja asiatica chloroplast, comp... 154221 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007412.1 nt Buddleja asiatica chloroplast, comp... 154215 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007414.1 nt Buddleja bhutanica chloroplast, com... 154177 bp Buddleja bhutanica QL-PLN-00-007 558 bp View
OP007415.1 nt Buddleja asiatica chloroplast, comp... 154170 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007416.1 nt Buddleja asiatica chloroplast, comp... 154206 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007417.1 nt Buddleja asiatica chloroplast, comp... 154211 bp Buddleja asiatica QL-PLN-00-007 558 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.