Match details
Record ID: |
OP007405.1 |
Database: |
nt |
Go to original record |
Description: |
Buddleja sp. GJ33 chloroplast, complete genome. |
Taxon: |
Buddleja sp. GJ33 |
Original size: |
154196 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48145 |
48709 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgttgt ctcaaaacaa aggttcagaa
151 ggcgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttaact gcgttggtag cggaatctta atctttcgat cgaaacttca
251 gaaagagtga cggataaacg tatctattga atactatatc aaatgattaa
301 tgatggaccg aatctgtatt tttttatatg aaaaatggaa aaattggtgt
351 gaatttattc cacattgaag aaagaatcaa ataaaatatt cattcatcaa
401 atcattcact ccatagtctg atagatcttt taaagaactg attaatcgga
451 cgagaataaa gatagagtcc cattctacat gtcaataccg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.