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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT650264.1 nt Eremophila glabra voucher MELUD1191... 151508 bp Eremophila glabra QL-PLN-00-007 565 bp View
MT650267.1 nt Eremophila rugosa voucher MELUD1191... 151589 bp Eremophila rugosa QL-PLN-00-007 565 bp View
MT650275.1 nt Eremophila alternifolia voucher MEL... 151651 bp Eremophila alternifolia QL-PLN-00-007 565 bp View
MT650279.1 nt Eremophila longifolia voucher MELUD... 151668 bp Eremophila longifolia QL-PLN-00-007 565 bp View
MT650281.1 nt Eremophila deserti voucher MELUD119... 151577 bp Eremophila deserti QL-PLN-00-007 564 bp View
MT650282.1 nt Eremophila scoparia voucher MELUD11... 151948 bp Eremophila scoparia QL-PLN-00-007 565 bp View
MT650283.1 nt Eremophila polyclada voucher MELUD1... 151619 bp Eremophila polyclada QL-PLN-00-007 564 bp View
MT650286.1 nt Eremophila longifolia voucher MELUD... 151656 bp Eremophila longifolia QL-PLN-00-007 564 bp View
MT650288.1 nt Eremophila alternifolia voucher MEL... 151674 bp Eremophila alternifolia QL-PLN-00-007 564 bp View
MT650290.1 nt Eremophila scoparia voucher MELUD11... 151628 bp Eremophila scoparia QL-PLN-00-007 564 bp View
MT650291.1 nt Eremophila glabra voucher MELUD1192... 151553 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650293.1 nt Eremophila subfloccosa voucher MELU... 151544 bp Eremophila subfloccosa QL-PLN-00-007 566 bp View
MT650294.1 nt Eremophila weldii voucher MELUD1192... 151683 bp Eremophila weldii QL-PLN-00-007 565 bp View
MT650296.1 nt Eremophila gibbifolia voucher MELUD... 151746 bp Eremophila gibbifolia QL-PLN-00-007 564 bp View
MT650298.1 nt Eremophila serrulata voucher MELUD1... 151120 bp Eremophila serrulata QL-PLN-00-007 564 bp View
MT650300.1 nt Eremophila latrobei voucher MELUD11... 151477 bp Eremophila latrobei QL-PLN-00-007 557 bp View
MT650302.1 nt Myoporum petiolatum voucher MELUD11... 151903 bp Myoporum petiolatum QL-PLN-00-007 564 bp View
MT650304.1 nt Leucophyllum zygophyllum voucher ME... 154160 bp Leucophyllum zygophyllum QL-PLN-00-007 561 bp View
MT650306.1 nt Eremophila debilis voucher MELUD119... 148274 bp Eremophila debilis QL-PLN-00-007 557 bp View
MT650308.1 nt Eremophila longifolia voucher MELUD... 151833 bp Eremophila longifolia QL-PLN-00-007 559 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.