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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN780995.1 nt Eragrostis tef isolate T12-1 chloro... 134352 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780996.1 nt Eragrostis tef isolate t51 chloropl... 134422 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780997.1 nt Eragrostis tef isolate T93-1 plasti... 134355 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780998.1 nt Eragrostis tef isolate t100 chlorop... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780999.1 nt Eragrostis tef isolate t49 chloropl... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781000.1 nt Eragrostis tef isolate T74-2 plasti... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781001.1 nt Eragrostis tef isolate T90-2 plasti... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781002.1 nt Eragrostis tef isolate t69 chloropl... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781003.1 nt Eragrostis tef isolate T1-2 plastid... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781004.1 nt Eragrostis tef isolate T11-2 plasti... 134352 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781005.1 nt Eragrostis tef isolate t45 chloropl... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781006.1 nt Eragrostis tef isolate t15 chloropl... 134418 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781007.1 nt Eragrostis tef isolate t3 chloropla... 134437 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781008.1 nt Eragrostis tef isolate T115-1 plast... 134414 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781009.1 nt Eragrostis tef isolate T14-1 plasti... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781010.1 nt Eragrostis tef isolate T16-1 plasti... 134358 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781011.1 nt Eragrostis tef isolate t10 chloropl... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781012.1 nt Eragrostis tef isolate T44-1 plasti... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781013.1 nt Eragrostis tef isolate T21-2 plasti... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781014.1 nt Eragrostis tef isolate t116 chlorop... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.