Match details
Record ID: |
MN781008.1 |
Database: |
nt |
Go to original record |
Description: |
Eragrostis tef isolate T115-1 plastid, complete genome. |
Taxon: |
Eragrostis tef |
Original size: |
134414 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46373 |
46988 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aatgaaaagg ataggtgcag agactcaatg gaagctattc
201 taacgaatcg aggtgtaatt acgttgtgtt ggtaatgaaa ctccctctaa
251 atttgagaaa gaagggcttt atacatctaa tacacacgta tagatactga
301 catagcaaac gattaatcac agaacccata tcataatata ggttctttat
351 ttatttttta gaatgaaatt aggaatgatt atgaaataga aaattctgaa
401 ttttgattag aattattgtg aatccattcc actcgaatat tgagtaatca
451 aatccttcaa ttcattgttt ttgagatctt ttaaaaagag gattaatcgg
501 acgaggataa agagagagtc ccattctaca tgtcaatact gacaacaatg
551 aaatttctag taaaaggaaa atccgtcgac tttataagtc gtgagggttc
601 aagtccctct atcccc
View other 32 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.