European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK570600.1 nt Pseudognaphalium sp. AK363506 vouch... 152886 bp Pseudognaphalium sp. AK363506 QL-PLN-00-007 521 bp View
MK570601.1 nt Pseudognaphalium sp. CHR639461 plas... 152885 bp Pseudognaphalium sp. CHR639461 QL-PLN-00-007 521 bp View
MK570602.1 nt Pseudognaphalium sp. RS-2020 vouche... 152691 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View
MK570603.1 nt Pseudognaphalium sp. CHR646720 vouc... 152878 bp Pseudognaphalium sp. CHR646720 QL-PLN-00-007 521 bp View
MK570604.1 nt Pseudognaphalium luteoalbum plastid. 152895 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MK570605.1 nt Pseudognaphalium luteoalbum voucher... 152899 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MK570606.1 nt Pseudognaphalium sp. RS-2020 vouche... 152868 bp Pseudognaphalium sp. RS-2020 QL-PLN-00-007 521 bp View
MK570607.1 nt Pseudognaphalium sp. CHR655028 vouc... 152796 bp Pseudognaphalium sp. CHR655028 QL-PLN-00-007 521 bp View
MK570608.1 nt Pseudognaphalium californicum vouch... 152769 bp Pseudognaphalium californicum QL-PLN-00-007 521 bp View
MK570609.1 nt Pseudognaphalium luteoalbum voucher... 152701 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MK570610.1 nt Pseudognaphalium sandwicensium vouc... 152994 bp Pseudognaphalium sandwicensium QL-PLN-00-007 521 bp View
MK593543.1 nt Arundinella hirta isolate USDA PI 2... 140351 bp Arundinella hirta QL-PLN-00-007 525 bp View
MK593544.1 nt Arundinella hookeri voucher K:K0050... 140247 bp Arundinella hookeri QL-PLN-00-007 525 bp View
MK593545.1 nt Arundinella nepalensis voucher K:MS... 140801 bp Arundinella nepalensis QL-PLN-00-007 525 bp View
MK593547.1 nt Cymbopogon citratus isolate 09Cc ch... 139878 bp Cymbopogon citratus QL-PLN-00-007 525 bp View
MK593549.1 nt Dichanthium aristatum isolate 08Da ... 138088 bp Dichanthium aristatum QL-PLN-00-007 531 bp View
MK593550.1 nt Digitaria glauca voucher K:MSV950 c... 138962 bp Digitaria glauca QL-PLN-00-007 615 bp View
MK593551.1 nt Garnotia stricta var. longiseta vou... 139831 bp Garnotia stricta var. longiseta QL-PLN-00-007 528 bp View
MK593552.1 nt Glyphochloa forficulata voucher K:H... 139555 bp Glyphochloa forficulata QL-PLN-00-007 525 bp View
MK593553.1 nt Gynerium sagittatum voucher K:P6-30... 140815 bp Gynerium sagittatum QL-PLN-00-007 618 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.