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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH884562.1 nt Plectranthus hadiensis isolate Kew ... 1627 bp Coleus hadiensis QL-PLN-00-007 551 bp View
MH884563.1 nt Plectranthus hadiensis isolate P.ha... 1625 bp Coleus hadiensis QL-PLN-00-007 551 bp View
MH898851.1 nt Poa ammophila voucher CAN:Gillespie... 1778 bp Poa ammophila QL-PLN-00-007 611 bp View
MH898854.1 nt Poa cenisia subsp. contracta vouche... 1778 bp Poa cenisia subsp. contracta QL-PLN-00-007 611 bp View
MH898856.1 nt Poa macroclada voucher US:Soreng 74... 1778 bp Poa macroclada QL-PLN-00-007 611 bp View
MH898857.1 nt Poa psychrophila voucher CAN:Gilles... 1778 bp Poa psychrophila QL-PLN-00-007 611 bp View
MH898858.1 nt Poa unilateralis subsp. pachypholis... 1783 bp Poa unilateralis subsp. pachypholis QL-PLN-00-007 611 bp View
MH898859.1 nt Poa unilateralis subsp. unilaterali... 1778 bp Poa unilateralis subsp. unilateralis QL-PLN-00-007 611 bp View
MH918069.1 nt Stipa heptapotamica isolate 38 plas... 137829 bp Stipa heptapotamica QL-PLN-00-007 598 bp View
MH918071.1 nt Stipa lessingiana isolate 50 plasti... 137824 bp Stipa lessingiana QL-PLN-00-007 598 bp View
MH918072.1 nt Stipa lessingiana isolate 53 plasti... 137827 bp Stipa lessingiana QL-PLN-00-007 598 bp View
MH918074.1 nt Stipa richteriana isolate 13 plasti... 137824 bp Stipa richteriana QL-PLN-00-007 598 bp View
MH918076.1 nt Stipa richteriana isolate 22 plasti... 137828 bp Stipa richteriana QL-PLN-00-007 598 bp View
MH918077.1 nt Stipa richteriana isolate 43 plasti... 137824 bp Stipa richteriana QL-PLN-00-007 598 bp View
MH921380.1 nt Poa attalica voucher CAN:Gillespie ... 1779 bp Poa attalica QL-PLN-00-007 618 bp View
MH921381.1 nt Poa persica subsp. multiradiata vou... 1746 bp Poa persica subsp. multiradiata QL-PLN-00-007 618 bp View
MH921382.1 nt Poa diaphora subsp. oxyglumis vouch... 1743 bp Poa diaphora subsp. oxyglumis QL-PLN-00-007 618 bp View
MH921386.1 nt Poa persica voucher IRAN:Yazdanfard... 1745 bp Poa persica QL-PLN-00-007 618 bp View
MH921387.1 nt Poa persica voucher TARI<IRN>:Mozaf... 1745 bp Poa persica QL-PLN-00-007 618 bp View
MH921388.1 nt Poa persica voucher TARI<IRN>:Assad... 1745 bp Poa persica QL-PLN-00-007 618 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.