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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH181212.1 nt Andropogon brazzae isolate TK382 ch... 139840 bp Andropogon brazzae QL-PLN-00-007 525 bp View
MH181213.1 nt Andropogon selloanus isolate TK465 ... 140651 bp Anatherum selloanum QL-PLN-00-007 525 bp View
MH181214.1 nt Elymandra subulata isolate TK743 ch... 139800 bp Elymandra subulata QL-PLN-00-007 525 bp View
MH181215.1 nt Andropogon munroi isolate TK451 chl... 140230 bp Andropogon munroi QL-PLN-00-007 525 bp View
MH181216.1 nt Andropogon mohrii isolate TK543 chl... 141311 bp Anatherum mohrii QL-PLN-00-007 525 bp View
MH181217.1 nt Andropogon reedii isolate TK735 chl... 139743 bp Schizachyrium reedii QL-PLN-00-007 531 bp View
MH181218.1 nt Andropogon aequatoriensis isolate T... 140088 bp Anatherum aequatoriensis QL-PLN-00-007 525 bp View
MH181219.1 nt Schizachyrium exile isolate TK700 c... 138540 bp Schizachyrium exile QL-PLN-00-007 525 bp View
MH181220.1 nt Hyparrhenia figariana isolate TK690... 138625 bp Hyparrhenia figariana QL-PLN-00-007 530 bp View
MH181221.1 nt Andropogon floridanus isolate TK410... 140528 bp Anatherum floridanum QL-PLN-00-007 525 bp View
MH181222.1 nt Andropogon gerardii isolate TK417 c... 134148 bp Andropogon gerardi QL-PLN-00-007 525 bp View
MH181224.1 nt Andropogon canaliculatus isolate TK... 138817 bp Andropogon canaliculatus QL-PLN-00-007 534 bp View
MH181225.1 nt Andropogon schirensis isolate TK494... 138865 bp Andropogon schirensis QL-PLN-00-007 525 bp View
MH181226.1 nt Hyparrhenia umbrosa isolate TK615 c... 139296 bp Hyparrhenia umbrosa QL-PLN-00-007 530 bp View
MH181227.1 nt Schizachyrium djalonicum isolate TK... 138422 bp Schizachyrium djalonicum QL-PLN-00-007 525 bp View
MH181228.1 nt Schizachyrium claudopus isolate TK7... 139385 bp Schizachyrium claudopus QL-PLN-00-007 525 bp View
MH181229.1 nt Hyparrhenia newtonii isolate TK338 ... 138892 bp Hyparrhenia newtonii QL-PLN-00-007 530 bp View
MH181230.1 nt Andropogon urbanianus isolate TK472... 140616 bp Anatherum urbanianum QL-PLN-00-007 525 bp View
MH181231.1 nt Andropogon mannii isolate TK486 chl... 139015 bp Andropogon mannii QL-PLN-00-007 531 bp View
MH181232.1 nt Andropogon liebmannii isolate TK443... 140695 bp Anatherum liebmannii QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.