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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH036259.1 nt Eriachne obtusa chloroplast, comple... 134626 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036260.1 nt Eriachne obtusa chloroplast, comple... 134625 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036261.1 nt Eriachne obtusa chloroplast, comple... 134639 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036262.1 nt Eriachne obtusa chloroplast, comple... 134622 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036263.1 nt Eriachne obtusa chloroplast, comple... 134629 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036264.1 nt Eriachne obtusa chloroplast, comple... 134629 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036265.1 nt Eriachne obtusa chloroplast, comple... 134640 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036266.1 nt Eriachne obtusa chloroplast, comple... 134628 bp Eriachne obtusa QL-PLN-00-007 560 bp View
MH036270.1 nt Eriachne pauciflora chloroplast, co... 134468 bp Eriachne pauciflora QL-PLN-00-007 606 bp View
MH036273.1 nt Eriachne schultziana chloroplast, c... 134791 bp Eriachne schultziana QL-PLN-00-007 606 bp View
MH036274.1 nt Eriachne schultziana chloroplast, c... 134808 bp Eriachne schultziana QL-PLN-00-007 606 bp View
MH036275.1 nt Eriachne schultziana chloroplast, c... 134815 bp Eriachne schultziana QL-PLN-00-007 606 bp View
MH036276.1 nt Eriachne schultziana chloroplast, c... 134777 bp Eriachne schultziana QL-PLN-00-007 606 bp View
MH036278.1 nt Eriachne sp. Teisher 58 chloroplast... 134870 bp Eriachne sp. Teisher 58 QL-PLN-00-007 597 bp View
MH036279.1 nt Eriachne stipacea chloroplast, comp... 134770 bp Eriachne stipacea QL-PLN-00-007 606 bp View
MH036280.1 nt Eriachne stipacea chloroplast, comp... 134818 bp Eriachne stipacea QL-PLN-00-007 606 bp View
MH036283.1 nt Eriachne triodioides chloroplast, c... 134791 bp Eriachne triodioides QL-PLN-00-007 606 bp View
MH036284.1 nt Eriachne triodioides chloroplast, c... 134785 bp Eriachne triodioides QL-PLN-00-007 606 bp View
MH036285.1 nt Eriachne triodioides chloroplast, c... 134791 bp Eriachne triodioides QL-PLN-00-007 606 bp View
MH045574.1 nt Physalis angulata chloroplast, comp... 156905 bp Physalis angulata QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.