Match details
Record ID: |
MH036280.1 |
Database: |
nt |
Go to original record |
Description: |
Eriachne stipacea chloroplast, complete genome. |
Taxon: |
Eriachne stipacea |
Original size: |
134818 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46650 |
47255 |
+ |
606 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ccacttttga taaacaagcg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaatcga ggtaattacg ttgtgttagt agggaaactc cctctaaatt
251 agagaaagaa gggctttata gatctaatac acacgtatgg atactggcat
301 agcaaaccaa aggattaatc acagaatcct atatcataat atcataatat
351 aggttcttta tttatttttg aaaatgaaat tcagaattat tatgaaatag
401 aaaattctga atccattcta ctcgaacatt gagtaatcaa atccttcatt
451 cattgttttt gagatctttt aaaaagtgga gattaatcgg acgaggataa
501 agagagagtc ccattctaca tgtcaatact gacaacaatg aaatttctag
551 taaaaggaaa atccgtcgac tttataagtt gtgagggttc aagtccctct
601 atcccc
View other 11 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
606 |
587 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.