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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LN877395.1 nt Dianthus gratianopolitanus chloropl... 149670 bp Dianthus gratianopolitanus QL-PLN-00-007 618 bp View
LN877396.1 nt Dianthus moravicus chloroplast geno... 149524 bp Dianthus moravicus QL-PLN-00-007 619 bp View
LN896358.1 nt Miscanthus sinensis subsp. sinensis... 141395 bp Miscanthus sinensis subsp. sinensis QL-PLN-00-007 526 bp View
LN896359.1 nt Saccharum hybrid cultivar Q165 chlo... 141181 bp Saccharum hybrid cultivar QL-PLN-00-007 526 bp View
LN896360.1 nt Saccharum spontaneum cultivar SES20... 141162 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LP773653.1 emblrelpat Sequence 9 from Patent EP3269827. 640 bp Zea mays QL-PLN-00-007 532 bp View
LR537446.1 nt Brachypodium distachyon genome asse... 135160 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537449.1 nt Brachypodium distachyon genome asse... 135165 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537450.1 nt Brachypodium distachyon genome asse... 135171 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537451.1 nt Brachypodium distachyon genome asse... 135180 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537452.1 nt Brachypodium distachyon genome asse... 135194 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537454.1 nt Brachypodium distachyon genome asse... 135188 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537455.1 nt Brachypodium distachyon genome asse... 135142 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537456.1 nt Brachypodium distachyon genome asse... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537457.1 nt Brachypodium distachyon genome asse... 135143 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537459.1 nt Brachypodium distachyon genome asse... 135180 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537460.1 nt Brachypodium distachyon genome asse... 135042 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537462.1 nt Brachypodium distachyon genome asse... 135152 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537464.1 nt Brachypodium distachyon genome asse... 135150 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LR537465.1 nt Brachypodium distachyon genome asse... 135132 bp Brachypodium distachyon QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.