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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LN849912.1 nt Saccharum spontaneum chloroplast co... 141185 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LN849914.1 nt Saccharum hybrid chloroplast comple... 141151 bp Saccharum hybrid cultivar QL-PLN-00-007 526 bp View
LN869217.1 nt Miscanthus sacchariflorus complete ... 141361 bp Miscanthus sacchariflorus QL-PLN-00-007 526 bp View
LN869218.1 nt Miscanthus sacchariflorus complete ... 141361 bp Miscanthus sacchariflorus QL-PLN-00-007 526 bp View
LN869219.1 nt Miscanthus sacchariflorus complete ... 141361 bp Miscanthus sacchariflorus QL-PLN-00-007 526 bp View
LN869220.1 nt Miscanthus sinensis subsp. condensa... 141295 bp Miscanthus sinensis subsp. condensatus QL-PLN-00-007 526 bp View
LN869221.1 nt Miscanthus sinensis subsp. sinensis... 141296 bp Miscanthus sinensis subsp. sinensis QL-PLN-00-007 526 bp View
LN869222.1 nt Miscanthus sinensis subsp. sinensis... 141296 bp Miscanthus sinensis subsp. sinensis QL-PLN-00-007 526 bp View
LN869223.1 nt Miscanthus sinensis subsp. sinensis... 141296 bp Miscanthus sinensis subsp. sinensis QL-PLN-00-007 526 bp View
LN869224.1 nt Miscanthus sinensis var. purpurasce... 141371 bp Miscanthus sinensis var. purpurascens QL-PLN-00-007 526 bp View
LN869226.1 nt Miscanthus sinensis subsp. sinensis... 141318 bp Miscanthus sinensis subsp. sinensis QL-PLN-00-007 526 bp View
LN869227.1 nt Miscanthus sinensis subsp. sinensis... 141409 bp Miscanthus sinensis subsp. sinensis QL-PLN-00-007 526 bp View
LN869228.1 nt Miscanthus sinensis subsp. sinensis... 141318 bp Miscanthus sinensis subsp. sinensis QL-PLN-00-007 526 bp View
LN869229.1 nt Miscanthus transmorrisonensis compl... 141266 bp Miscanthus sinensis QL-PLN-00-007 526 bp View
LN877387.1 nt Dianthus gratianopolitanus chloropl... 149585 bp Dianthus gratianopolitanus QL-PLN-00-007 617 bp View
LN877388.1 nt Dianthus gratianopolitanus chloropl... 149511 bp Dianthus gratianopolitanus QL-PLN-00-007 619 bp View
LN877389.1 nt Dianthus gratianopolitanus chloropl... 149735 bp Dianthus gratianopolitanus QL-PLN-00-007 618 bp View
LN877390.1 nt Dianthus gratianopolitanus chloropl... 149662 bp Dianthus gratianopolitanus QL-PLN-00-007 618 bp View
LN877393.1 nt Dianthus gratianopolitanus chloropl... 149596 bp Dianthus gratianopolitanus QL-PLN-00-007 618 bp View
LN877394.1 nt Dianthus gratianopolitanus chloropl... 149474 bp Dianthus gratianopolitanus QL-PLN-00-007 619 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.