Match details
Record ID: |
LN877390.1 |
Database: |
nt |
Go to original record |
Description: |
Dianthus gratianopolitanus chloroplast genome, complete sequence, isolate dg1856 |
Taxon: |
Dianthus gratianopolitanus |
Original size: |
149662 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46660 |
47277 |
+ |
618 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggaa
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aataaaaaaa
101 agggtaatcc tgagccaact ccttttgttt ccttttttca aaagaaaaaa
151 aggataggtg cagagactca aaggaagctg ttctaacaaa ttgggttgac
201 tgtgctgtgt tgttataaga cttcttccgt ctaaattccc ataaaaaagg
251 gggggtaaaa tcgacggagt gaaatgatta atgacaaccc gaatctgttc
301 tgtatttttt tttatatatt atatatataa atccatactt tattctatat
351 ttagagtaga gatctagaag attaaatgaa aaaatgcaag aattcttgtg
401 aatccattca aagttgaaag cagaatcaat caagatttat tcattaaaat
451 attcacacta actccatagt ctgatagata ttgtgaagaa cttattaatc
501 ggatgagaat aaagatagag tcccgtacta catgtcaata ctgacaacaa
551 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcatgagggt
601 tcaagtccct ctatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
618 |
599 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.