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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ586101.1 nt Tetraselago wilmsii chloroplast trn... 1762 bp Tetraselago wilmsii QL-PLN-00-007 561 bp View
AJ620117.1 nt Ixora coccinea chloroplast trnT-trn... 1710 bp Ixora coccinea QL-PLN-00-007 565 bp View
AJ620118.1 nt Alberta magna chloroplast trnT-trnL... 1594 bp Alberta magna QL-PLN-00-007 567 bp View
AJ620119.1 nt Ancylanthos rubiginosus chloroplast... 1701 bp Ancylanthos rubiginosus QL-PLN-00-007 552 bp View
AJ620120.1 nt Afrocanthium burttii chloroplast tr... 1748 bp Afrocanthium burttii QL-PLN-00-007 559 bp View
AJ620121.1 nt Canthium ciliatum chloroplast trnT-... 1705 bp Canthium ciliatum QL-PLN-00-007 552 bp View
AJ620122.1 nt Canthium coromandelicum chloroplast... 1723 bp Canthium coromandelicum QL-PLN-00-007 552 bp View
AJ620123.1 nt Afrocanthium gilfillanii chloroplas... 1785 bp Afrocanthium gilfillanii QL-PLN-00-007 559 bp View
AJ620124.1 nt Canthium glaucum chloroplast trnT-t... 1721 bp Canthium glaucum QL-PLN-00-007 552 bp View
AJ620125.1 nt Canthium inerme chloroplast trnT-tr... 1728 bp Canthium inerme QL-PLN-00-007 552 bp View
AJ620126.1 nt Afrocanthium keniense chloroplast t... 1753 bp Afrocanthium keniense QL-PLN-00-007 559 bp View
AJ620127.1 nt Afrocanthium lactescens chloroplast... 1743 bp Afrocanthium lactescens QL-PLN-00-007 559 bp View
AJ620128.1 nt Afrocanthium mundianum chloroplast ... 1703 bp Afrocanthium mundianum QL-PLN-00-007 559 bp View
AJ620129.1 nt Canthium oligocarpum chloroplast tr... 1724 bp Canthium oligocarpum QL-PLN-00-007 552 bp View
AJ620130.1 nt Afrocanthium parasiebenlistii chlor... 1726 bp Afrocanthium parasiebenlistii QL-PLN-00-007 559 bp View
AJ620131.1 nt Canthium pseudosetiflorum chloropla... 1735 bp Bullockia pseudosetiflora QL-PLN-00-007 552 bp View
AJ620132.1 nt Afrocanthium pseudoverticillatum ch... 1767 bp Afrocanthium pseudoverticillatum QL-PLN-00-007 559 bp View
AJ620133.1 nt Afrocanthium siebenlistii chloropla... 1748 bp Afrocanthium siebenlistii QL-PLN-00-007 559 bp View
AJ620134.1 nt Cuviera angolensis chloroplast trnT... 1725 bp Cuviera angolensis QL-PLN-00-007 552 bp View
AJ620135.1 nt Cyclophyllum barbatum chloroplast t... 1732 bp Cyclophyllum barbatum QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.