Match details
Record ID: |
AJ620133.1 |
Database: |
nt |
Go to original record |
Description: |
Afrocanthium siebenlistii chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Luke et al. 9121 (UPS) |
Taxon: |
Afrocanthium siebenlistii |
Original size: |
1748 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
801 |
1359 |
+ |
559 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaat gaaaaaggga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttggctgcg ttagtagaga aatctttcta tcgaaaattc
251 cgaaaggata aaacgtatac gtattgaata ctatatcaaa tgattaatga
301 cgactcgact gaatctgtat tttttatatg aaaatggaag aattggtgtg
351 aatagattcc acattgaaga aagaatcgaa tattcattga ttaaatgatt
401 cactccatag tctgatagat cttttcaaga attgattaat cggacgagaa
451 taaagataga gtcccgttct acatgtcaat gtcggcaaca atgaaattta
501 tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
551 tctatcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
559 |
540 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.