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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM592168.1 nt Tarenna leioloba voucher Mouly 174 ... 1680 bp Tarenna leioloba QL-PLN-00-007 567 bp View
KM592169.1 nt Tarenna microcarpa voucher Mouly 29... 1658 bp Tarenna microcarpa QL-PLN-00-007 567 bp View
KM592170.1 nt Tarenna nitidula voucher Jongkind 8... 1663 bp Tarenna nitidula QL-PLN-00-007 566 bp View
KM592171.1 nt Tarenna pallidula voucher Dessein &... 1682 bp Tarenna pallidula QL-PLN-00-007 567 bp View
KM592172.1 nt Tarenna pembensis voucher Luke & al... 1686 bp Tarenna pembensis QL-PLN-00-007 567 bp View
KM592173.1 nt Tarenna precidantenna voucher Desse... 1684 bp Tarenna precidantenna QL-PLN-00-007 567 bp View
KM592174.1 nt Tarenna rhypalostigma voucher Mouly... 1665 bp Tarenna rhypalostigma QL-PLN-00-007 567 bp View
KM592175.1 nt Tarenna roseicosta voucher Luke & a... 1681 bp Tarenna roseicosta QL-PLN-00-007 567 bp View
KM592176.1 nt Tarenna sambucina voucher Mouly & a... 1670 bp Tarenna sambucina QL-PLN-00-007 567 bp View
KM592177.1 nt Tarenna vignei voucher Jongkind 812... 1682 bp Tarenna vignei QL-PLN-00-007 567 bp View
KM592178.1 nt Tarenna alleizettei voucher De Bloc... 1668 bp Tarenna alleizettei QL-PLN-00-007 567 bp View
KM592180.1 nt Tarenna grevei voucher De Block & a... 1668 bp Tarenna grevei QL-PLN-00-007 567 bp View
KM592182.1 nt Tarenna thouarsiana voucher De Bloc... 1667 bp Tarenna thouarsiana QL-PLN-00-007 567 bp View
KM592183.1 nt Tarenna uniflora voucher Bremer et ... 1681 bp Tarenna uniflora QL-PLN-00-007 567 bp View
KM592184.1 nt Tennantia sennii voucher Luke et al... 1678 bp Tennantia sennii QL-PLN-00-007 567 bp View
KM592185.1 nt Tricalysia semidecidua voucher Dess... 1692 bp Tricalysia semidecidua QL-PLN-00-007 565 bp View
KM592186.1 nt Vangueria madagascariensis voucher ... 1694 bp Vangueria madagascariensis QL-PLN-00-007 556 bp View
KM668208.1 nt Dianthus longicalyx chloroplast, co... 149539 bp Dianthus longicalyx QL-PLN-00-007 617 bp View
KM881635.1 nt Oryza barthii isolate 101381 chloro... 134603 bp Oryza barthii QL-PLN-00-007 615 bp View
KM881636.1 nt Oryza barthii isolate 104124 chloro... 134596 bp Oryza barthii QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.