Match details
Record ID: |
KM668208.1 |
Database: |
nt |
Go to original record |
Description: |
Dianthus longicalyx chloroplast, complete genome. |
Taxon: |
Dianthus longicalyx |
Original size: |
149539 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46560 |
47176 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggaa
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aataaaaaaa
101 agggtaatcc tgagccaact ccttttgttt ccttttttca aaagaaaaaa
151 aggataggtg cagagactca aaggaagctg ttctaacaaa ttgggttgac
201 tgtgctgtgt tattataaga cttcttccgt ctaaattccc ataaaaaggg
251 ggggtaaaat cgacggagtg aaatgattaa tgacaacccg aatctgttct
301 gtatttttat atatatatta tatatataaa tccatacttt attctatatt
351 tagagtagag atctagaaga ttaaatgaaa aaatgcaaga attcttgtga
401 atccattcaa agttgaaagc agaatcaatc aagatttatt cattaaaata
451 ttcacactaa ctccatagtc tgatagatct tgtgaagaac ttattaatcg
501 gatgagaata aagatagagt cccgtactac atgtcaatac tgacaacaat
551 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat catgagggtt
601 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.