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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM592119.1 nt Leptactina involucrata voucher Davi... 1662 bp Leptactina involucrata QL-PLN-00-007 567 bp View
KM592122.1 nt Leptactina papyrophloea voucher Luk... 1679 bp Leptactina papyrophloea QL-PLN-00-007 567 bp View
KM592125.1 nt Nichallea soyauxii voucher Dessein ... 1703 bp Nichallea soyauxii QL-PLN-00-007 578 bp View
KM592127.1 nt Paracephaelis cinerea voucher De Bl... 1667 bp Paracephaelis cinerea QL-PLN-00-007 567 bp View
KM592128.1 nt Paracephaelis saxatilis voucher De ... 1667 bp Paracephaelis saxatilis QL-PLN-00-007 567 bp View
KM592129.1 nt Paracephaelis tiliacea voucher Groe... 1667 bp Paracephaelis tiliacea QL-PLN-00-007 567 bp View
KM592130.1 nt Pavetta agrostiphylla voucher Breme... 1678 bp Pavetta agrostiphylla QL-PLN-00-007 567 bp View
KM592131.1 nt Pavetta batesiana voucher Dessein &... 1683 bp Pavetta batesiana QL-PLN-00-007 567 bp View
KM592132.1 nt Pavetta hymenophylla voucher Luke e... 1676 bp Pavetta hymenophylla QL-PLN-00-007 567 bp View
KM592133.1 nt Pavetta indica voucher Andreasen 20... 1678 bp Pavetta indica QL-PLN-00-007 567 bp View
KM592134.1 nt Pavetta sansibarica voucher Luke et... 1685 bp Pavetta sansibarica QL-PLN-00-007 568 bp View
KM592135.1 nt Pavetta schumanniana voucher Dessei... 1684 bp Pavetta schumanniana QL-PLN-00-007 567 bp View
KM592136.1 nt Pavetta sp. B SJ-2014 trnT-trnL int... 1677 bp Pavetta sp. B SJ-2014 QL-PLN-00-007 567 bp View
KM592137.1 nt Pavetta sp. C SJ-2014 trnT-trnL int... 1678 bp Pavetta sp. C SJ-2014 QL-PLN-00-007 567 bp View
KM592138.1 nt Pavetta suffruticosa voucher Lachen... 1668 bp Pavetta suffruticosa QL-PLN-00-007 567 bp View
KM592139.1 nt Pavetta sp. A SJ-2014 trnT-trnL int... 1681 bp Pavetta sp. A SJ-2014 QL-PLN-00-007 567 bp View
KM592140.1 nt Pavetta stenosepala voucher Luke et... 1685 bp Pavetta stenosepala QL-PLN-00-007 567 bp View
KM592141.1 nt Pavetta tarennoides voucher Luke et... 1684 bp Pavetta tarennoides QL-PLN-00-007 568 bp View
KM592142.1 nt Pavetta ternifolia voucher Ntore 19... 1678 bp Pavetta ternifolia QL-PLN-00-007 567 bp View
KM592143.1 nt Pavetta tetramera voucher Van de We... 1668 bp Pavetta tetramera QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.