Match details
Record ID: |
KM592141.1 |
Database: |
nt |
Go to original record |
Description: |
Pavetta tarennoides voucher Luke et al 8325 (UPS) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Pavetta tarennoides |
Original size: |
1684 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
753 |
1320 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaaatt gaattgagcc ttggtatgga
51 aacccactaa gtgataactt tcaaattcag agaaaccctg gaattaataa
101 aaaggggcaa tcctgagcca aatcccgttt tccgaaacca aaggttcaga
151 aagtgaaaag gggataggtg cagagactca acggaagctg ttctaacaaa
201 tggagttggc tgcgttagta gagaaatctt tccatctaaa attccgaaag
251 ggtaaagtga aggataaacg tatatatacg tattgaatac tatatcaaat
301 gattaatgac gactcgactg aatctgtatt ttttatatga aaacggaaga
351 attggtgtga atagattcca cattgaagaa agaatcgaat attcattgat
401 caaatgattc actccatagt ctgatagatc ttttcaagaa ttgattaatc
451 ggacgagaat aaagatagag tcctgttcta catgtcaatg tcggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.