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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815453.1 nt Empogona kirkii voucher Lantz 135 (... 1707 bp Empogona kirkii QL-PLN-00-007 564 bp View
KJ815454.1 nt Empogona lanceolata voucher Bremer ... 1698 bp Empogona lanceolata QL-PLN-00-007 563 bp View
KJ815458.1 nt Empogona ruandensis voucher Kuchar ... 1694 bp Empogona ruandensis QL-PLN-00-007 563 bp View
KJ815460.1 nt Tricalysia acocantheroides voucher ... 1709 bp Tricalysia acocantheroides QL-PLN-00-007 565 bp View
KJ815461.1 nt Tricalysia ambrensis voucher Bremer... 1713 bp Tricalysia ambrensis QL-PLN-00-007 565 bp View
KJ815462.1 nt Tricalysia analamazaotrensis vouche... 1705 bp Tricalysia analamazaotrensis QL-PLN-00-007 565 bp View
KJ815464.1 nt Tricalysia boiviniana voucher Razak... 1723 bp Tricalysia boiviniana QL-PLN-00-007 565 bp View
KJ815465.1 nt Tricalysia bridsoniana voucher Luke... 1703 bp Tricalysia bridsoniana QL-PLN-00-007 565 bp View
KJ815467.1 nt Tricalysia cryptocalyx voucher Raza... 1694 bp Tricalysia cryptocalyx QL-PLN-00-007 565 bp View
KJ815468.1 nt Tricalysia dauphinensis voucher Kai... 1698 bp Tricalysia dauphinensis QL-PLN-00-007 565 bp View
KJ815469.1 nt Tricalysia sp. Razakamalala RZK 640... 1706 bp Tricalysia sp. Razakamalala RZK 6403 QL-PLN-00-007 565 bp View
KJ815470.1 nt Tricalysia jasminiflora voucher Gro... 1693 bp Tricalysia jasminiflora QL-PLN-00-007 565 bp View
KJ815471.1 nt Tricalysia leucocarpa voucher Breme... 1720 bp Tricalysia leucocarpa QL-PLN-00-007 565 bp View
KJ815474.1 nt Tricalysia niamniamensis voucher Gi... 1647 bp Tricalysia niamniamensis QL-PLN-00-007 565 bp View
KJ815475.1 nt Tricalysia orientalis voucher Razaf... 1703 bp Tricalysia orientalis QL-PLN-00-007 565 bp View
KJ815476.1 nt Tricalysia pallens voucher Luke 832... 1697 bp Tricalysia pallens QL-PLN-00-007 565 bp View
KJ815477.1 nt Tricalysia perrieri voucher Razafim... 1703 bp Tricalysia perrieri QL-PLN-00-007 565 bp View
KJ815478.1 nt Tricalysia schliebenii voucher Luke... 1697 bp Tricalysia schliebenii QL-PLN-00-007 565 bp View
KJ815479.1 nt Tricalysia verdcourtiana voucher Lu... 1703 bp Tricalysia verdcourtiana QL-PLN-00-007 565 bp View
KJ815480.1 nt Rothmannia annae voucher Bremer et ... 1723 bp Rothmannia annae QL-PLN-00-007 563 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.