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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF965220.1 nt Leptactina platyphylla isolate H019... 1674 bp Leptactina platyphylla QL-PLN-00-007 567 bp View
KF965222.1 nt Mantalania sambiranensis isolate BQ... 1697 bp Mantalania sambiranensis QL-PLN-00-007 566 bp View
KF965226.1 nt Mitriostigma axillare isolate A002 ... 1670 bp Mitriostigma axillare QL-PLN-00-007 569 bp View
KF965230.1 nt Morelia senegalensis isolate BR067 ... 1354 bp Morelia senegalensis QL-PLN-00-007 567 bp View
KF965231.1 nt Neofranciella pterocarpon isolate B... 1608 bp Atractocarpus pterocarpon QL-PLN-00-007 567 bp View
KF965232.1 nt Oligocodon cunliffeae isolate BR068... 1329 bp Oligocodon cunliffeae QL-PLN-00-007 574 bp View
KF965235.1 nt Paracephaelis sp. De Block 1174 iso... 1685 bp Paracephaelis sp. De Block 1174 QL-PLN-00-007 567 bp View
KF965236.1 nt Paragenipa lancifolia isolate Q018 ... 1731 bp Paragenipa lancifolia QL-PLN-00-007 572 bp View
KF965238.1 nt Pelagodendron vitiense isolate BV09... 1659 bp Pelagodendron vitiense QL-PLN-00-007 567 bp View
KF965239.1 nt Petitiocodon parviflorum isolate BR... 902 bp Petitiocodon parviflorum QL-PLN-00-007 567 bp View
KF965240.1 nt Phellocalyx vollesenii isolate BN09... 1693 bp Phellocalyx vollesenii QL-PLN-00-007 567 bp View
KF965242.1 nt Polysphaeria lanceolata isolate AG0... 1738 bp Polysphaeria lanceolata QL-PLN-00-007 567 bp View
KF965243.1 nt Porterandia anisophylla isolate BY0... 1711 bp Porterandia anisophylla QL-PLN-00-007 567 bp View
KF965244.1 nt Porterandia anisophylla isolate BY0... 1699 bp Porterandia anisophylla QL-PLN-00-007 567 bp View
KF965245.1 nt Pouchetia baumanniana isolate J016 ... 1724 bp Pouchetia baumanniana QL-PLN-00-007 570 bp View
KF965246.1 nt Preussiodora sulphurea isolate BR01... 1679 bp Preussiodora sulphurea QL-PLN-00-007 566 bp View
KF965247.1 nt Preussiodora sulphurea isolate BR06... 1695 bp Preussiodora sulphurea QL-PLN-00-007 566 bp View
KF965248.1 nt Coffea mannii isolate B147 trnT-trn... 1647 bp Coffea mannii QL-PLN-00-007 571 bp View
KF965250.1 nt Ramosmania rodriguesii isolate L070... 1746 bp Ramosmania rodriguesii QL-PLN-00-007 567 bp View
KF965251.1 nt Randia aculeata isolate BQ085 trnT-... 1654 bp Randia aculeata QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.