Match details
Record ID: |
KF965226.1 |
Database: |
nt |
Go to original record |
Description: |
Mitriostigma axillare isolate A002 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Mitriostigma axillare |
Original size: |
1670 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
760 |
1328 |
+ |
569 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 taaggggcaa tcctgagcca aatcccgttt tcccaaacca aaggttcaga
151 aagtgaaaaa gggataggtg cagagactca acggaagctg ttctaacaaa
201 tggagttggc tgcgttagta gagaaatctt tccatctaaa attccgaaag
251 gataaagtga aggataaacg tatatatacg tattgaatac tatatcaaat
301 gattaatgac gactcgactt aatctgtatt ttttatatga aaacggaaga
351 attggtgtga atagattcca cattgaagaa agaatcgaat attcattgat
401 caaatgattc actccatagt ctgatagatc ttttcaagaa ttgattaatc
451 ggatgagaat aaagatagag tcccgttcta catgtcaatg tcggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa atcgtgaggg
551 ttcaagtccc tctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
569 |
550 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.