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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF965184.1 nt Coptosperma nigrescens isolate AM02... 1698 bp Coptosperma nigrescens QL-PLN-00-007 567 bp View
KF965185.1 nt Cordiera triflora isolate BR064 trn... 1734 bp Cordiera triflora QL-PLN-00-007 565 bp View
KF965186.1 nt Cremaspora triflora isolate H055 tr... 1665 bp Cremaspora triflora QL-PLN-00-007 567 bp View
KF965187.1 nt Cremaspora triflora isolate H097 tr... 1680 bp Cremaspora triflora QL-PLN-00-007 565 bp View
KF965188.1 nt Deccania pubescens isolate BR085 tr... 1258 bp Deccania pubescens QL-PLN-00-007 567 bp View
KF965192.1 nt Dioecrescis erythroclada isolate BY... 1586 bp Dioecrescis erythroclada QL-PLN-00-007 567 bp View
KF965193.1 nt Ixora trilocularis isolate AS036 tr... 1610 bp Ixora trilocularis QL-PLN-00-007 566 bp View
KF965194.1 nt Duperrea pavettifolia isolate AM025... 1755 bp Duperrea pavettifolia QL-PLN-00-007 567 bp View
KF965195.1 nt Duroia eriopila isolate BQ091 trnT-... 1624 bp Duroia eriopila QL-PLN-00-007 566 bp View
KF965196.1 nt Duroia eriopila isolate BR061 trnT-... 1722 bp Duroia eriopila QL-PLN-00-007 566 bp View
KF965199.1 nt Fagerlindia sp. ST 1818 isolate BX0... 1662 bp Benkara sp. ST 1818 QL-PLN-00-007 567 bp View
KF965200.1 nt Flagenium sp. Davis 1210 isolate AM... 1579 bp Flagenium sp. Davis 1210 QL-PLN-00-007 567 bp View
KF965201.1 nt Galiniera saxifraga isolate AF051 t... 1342 bp Galiniera saxifraga QL-PLN-00-007 567 bp View
KF965202.1 nt Galiniera saxifraga isolate BX074 t... 1701 bp Galiniera saxifraga QL-PLN-00-007 567 bp View
KF965204.1 nt Gardenia jasminoides isolate B021 t... 1657 bp Gardenia jasminoides QL-PLN-00-007 550 bp View
KF965205.1 nt Genipa americana isolate J013 trnT-... 1729 bp Genipa americana QL-PLN-00-007 567 bp View
KF965208.1 nt Heinsenia diervilleoides isolate R0... 1681 bp Heinsenia diervilleoides QL-PLN-00-007 567 bp View
KF965210.1 nt Hypobathrum racemosum isolate Q009 ... 1722 bp Hypobathrum racemosum QL-PLN-00-007 567 bp View
KF965212.1 nt Jovetia humilis isolate AG004 trnT-... 1702 bp Jovetia humilis QL-PLN-00-007 567 bp View
KF965219.1 nt Lemyrea krugii isolate AK091 trnT-t... 1720 bp Lemyrea krugii QL-PLN-00-007 572 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.