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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 577 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101   aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa acaaaggttc
151   agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201   gagttaaatg cgttggtaga ggaatcttta catcgaaact tcagaaagaa
251   aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactata
301   tcaaaatcaa atgattaatg atgacccgaa tctgtatttt ttctataaaa
351   aatagaagaa ttggtgtgaa tcgattctac attgaagaaa gaatcgaata
401   ttcattgatc aaaccattca ctccatagtc tgatagatct tttgaagaac
451   tgattaatcg gacgagaata aagatagagt cccgttctac atgtcaatac
501   cggcaacaat gaaatttatc gtaagaggaa aatccgtcga ctttaaaaat
551   cgtgagggtt caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ473890.1 nt Nicotiana tabacum isolate PilotoCub... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
KU199713.1 nt Nicotiana tabacum cultivar TN90 pla... 155992 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
MP413044.1 emblrelpat Sequence 5 from Patent WO2019224298. 1260 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473886.1 nt Nicotiana tabacum isolate 7-CX14 ch... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473887.1 nt Nicotiana tabacum isolate 189802E-H... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473888.1 nt Nicotiana tabacum isolate Hainan2 c... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473889.1 nt Nicotiana tabacum isolate Hainan3 c... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AH003085.2 nt Nicotiana tabacum tRNA-Ser (Ser-tRN... 2100 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AP019623.1 nt Nicotiana tabacum SR1_120719 chloro... 155943 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AP019624.1 nt Nicotiana tabacum apxA_T2_120719 ch... 161907 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AP019625.1 nt Nicotiana tabacum apxC_T2_120719 ch... 140013 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
HM066935.1 nt Nicotiana tabacum transgenic chloro... 17958 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
MZ707522.1 nt Nicotiana tabacum chloroplast, comp... 155943 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
HM066935.1 emblreltgn Nicotiana tabacum transgenic chloro... 17958 bp Nicotiana tabacum QL-PLN-00-007 577 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.