Match details
Record ID: |
OQ946692.1 |
Database: |
nt |
Go to original record |
Description: |
Coffea arabica x Coffea canephora plastid, complete genome. |
Taxon: |
Coffea arabica x Coffea canephora |
Original size: |
155188 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47699 |
48268 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151 cagaaagtga aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201 caaatggagt tggctgcgtt agtagagaaa tctttccatc taaaattccg
251 aaaggataaa gtgaaggata aacgtatata cgtattgaat actatattaa
301 atgattaatg acgactcaac tgaatctgta ttttttatat aaaaatggaa
351 gaattggtgt gaatagattc cacattgaag aaagaatcga atattcattg
401 atcaaatgat tcactccata gtctgataga tcttttcaag aattgattaa
451 tcggacgaga ataaagatag agtcccgttc tacatgtcaa tgtcggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
View other 51 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.