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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 570 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151   cagaaagtga aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201   caaatggagt tggctgcgtt agtagagaaa tctttccatc taaaattccg
251   aaaggataaa gtgaaggata aacgtatata cgtattgaat actatattaa
301   atgattaatg acgactcaac tgaatctgta ttttttatat aaaaatggaa
351   gaattggtgt gaatagattc cacattgaag aaagaatcga atattcattg
401   atcaaatgat tcactccata gtctgataga tcttttcaag aattgattaa
451   tcggacgaga ataaagatag agtcccgttc tacatgtcaa tgtcggcaac
501   aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551   gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF965183.1 nt Coffea arabica isolate F079 trnT-tr... 1658 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946691.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946701.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946711.1 nt Coffea eugenioides plastid, complet... 155169 bp Coffea eugenioides QL-PLN-00-007 570 bp View
OQ946723.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OR459824.1 nt Coffea arabica cultivar Caturra Chi... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
MN901638.1 nt Coffea arabica strain bourbon chlor... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OL789882.1 nt Coffea arabica chloroplast, complet... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946688.1 nt Coffea arabica x Coffea canephora p... 155124 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946690.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946692.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946693.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946694.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946696.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946697.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946699.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946700.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946702.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946703.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
AJ847402.1 nt Coffea eugenioides chloroplast DNA ... 1704 bp Coffea eugenioides QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.