Match details
Record ID: |
KP698992.1 |
Database: |
nt |
Go to original record |
Description: |
Vicia japonica isolate L-F_DF3 tRNA-Leu (trnL), trnL-F intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Vicia japonica |
Original size: |
684 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
526 |
+ |
526 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttaccaag tgaaaacttt caaattcaga gaaaccctgg aattaaaaat
101 gggtaatcct gagccaaatc cttctttccg aaaacaaaaa aagaaaagtt
151 cagaaagttc aaatcaaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttgac aacattcaat tgattaatga agatttctaa
251 cttctatttg taaattgtca atattttgtt ttgattctat cacaattgaa
301 acattagaat caaatcaatt acaactggaa gaaaaaatgg tgaatattca
351 ttgatccaat cagtcactcc actataatct gatggatctt ttgaatcact
401 gattaatcag acgagaataa agatagagtc ccattctaca tgtcaatatc
451 gacatcaatg aaattttgag taagaggaaa atccgtcgac tttagaaatc
501 gtgagggttc aagtccctct atcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
526 |
507 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.