Match details
Record ID: |
KJ729797.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria turkestanica clone 1 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria turkestanica |
Original size: |
1035 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
590 |
+ |
580 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag aaaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaacagt
151 aaaaaaaaaa ttattaaagt gagaagaaat gatggatagg tgcagagact
201 caacggaagc tgttctaaca aatggagttg actgcgttgt tataagaatt
251 cttccatcaa aacttaaaaa aagatcaaga caaaccctat atttagaatt
301 tagatttaga taaatacgta ctgaaatact ctaaaaaaga aaaaaacgtc
351 ttaatgggcg gacaaaatat gtctttttat atgaaaaagt ggaagaatat
401 tcatttataa aagtattcgc tccatggtcc gatagatctt ttttttgacg
451 aactgctcaa tcggacgaga atgaagatag agtcccattc tacatgtcaa
501 tactgacaac aatgaaattt atagtatgag gaaaatccgt cgactttaga
551 aatcgtgagg gttcaagtcc ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.61e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
580 |
561 |
2.61e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.