Match details
Record ID: |
KJ729791.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria soongarica clone 1 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria songarica |
Original size: |
1033 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
591 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag agaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaaaagt
151 aaaacaaatt cttaaagtga gaagaaataa tggataggtg cagagactca
201 acggaagctg ttctaacaaa tggagttgac tgtgttgtta taagaattct
251 tccatgaatt cttccatcaa aacttaaaaa aagatcaaga aaaaccctat
301 atttagataa atacgtactg aaatactcta aaaaagaaaa aaacgtctta
351 atgataatga cggccaaaat atgtcttttt tatatgaaaa atggaagaat
401 attcatttat caaagtattc gctccatggt ctgatagatt tttttttgac
451 gaactgctca atcggacgag aataaagata gagtcccatt ctacatgtca
501 atactgacaa caatgaaatt tatagtatga ggaaaatccg tcgactttag
551 aaatcgtgag ggttcaagtc cctctatccc c
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.