Match details
Record ID: |
HG997372.1 |
Database: |
nt |
Go to original record |
Description: |
Oryza sativa genome assembly, organelle: plastid:chloroplast |
Taxon: |
Oryza sativa |
Original size: |
134536 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46553 |
47167 |
+ |
615 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa
101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga
151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa
251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg
301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa
351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa
401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa
451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga
501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga
551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca
601 agtccctcta tcccc
View other 732 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
615 |
596 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.