Match details
Record ID: |
JN038404.1 |
Database: |
nt |
Go to original record |
Description: |
Synthetic construct clone SYNV GFP-CAT minireplicon hammerhead ribozyme, complete sequence; rsGFP and chloramphenicol acetyl transferase genes, complete cds; and trailer and hepatitis delta ribozyme, complete sequence. |
Taxon: |
synthetic construct |
Original size: |
3664 bp |
View other 8 matches for this record
View other 10854 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
1 |
0 |
812 |
1006 |
+ |
195 bp |
|
1 gcttctacaa atgccatcat tgcgataaag gaaaggctat cgttcaagat
51 gcctctaccg acagtggtcc caaagatgga cccccaccca cgaggaacat
101 cgtggaaaaa gaagacgttc caaccacgtc ttcaaagcaa gtggattgat
151 gtgatatctc cactgacgta agggatgacg cacaatccca ctatc
View other 279 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
94.7 |
19 bp |
1 |
0 |
1 |
19 |
1.44e-06 |
primerB |
100.0 |
20 bp |
0 |
0 |
195 |
176 |
9.28e-09 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.