Match details
Record ID: |
AB235011.1 |
Database: |
nt |
Go to original record |
Description: |
Cissus discolor chloroplast DNA, trnL-trnF IGS, isolate: 7468, partial sequence. |
Taxon: |
Cissus discolor |
Original size: |
1025 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
586 |
+ |
586 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ccgttttccg aaaacgacca agggttcaga
151 aaactataat aaaaaaggat aggtgcagag actcaacgga agctattcta
201 acaaaaacaa atggagttga ctatgttgcg ttgttaaacg aatccttcca
251 tcaaaattcc agaaccagaa aggatgaagg ataaacctat atacataggt
301 actgaaatat tatatcaaat gattaatgat ggctcgagtc tgtatttttt
351 gatatgaaaa atgaaagaat tgttgtaaat agattacaaa gaaaagaatc
401 gaatattcat tgctcaaata attcactcca tagtccgata gataaatctt
451 ttgaagaact gattaatcgg acgagaataa agatagagtc ccattctaca
501 tgtcaatacc gacaagaatg aaatttatag taagaggaaa atccgtcgac
551 tttaaaaatc gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
586 |
567 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.