Match details
Record ID: |
DQ353988.1 |
Database: |
nt |
Go to original record |
Description: |
Poa diaphora var. songarica voucher Soreng & Guney 4165 US trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Poa diaphora var. songarica |
Original size: |
1726 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
784 |
1395 |
+ |
612 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc cagttaatta cgttgtgttg ttagtggaat tccttcgaaa
251 ttcgaaaaag aagggcttta tacatcacac gtatagatac tgagatagca
301 aacgattaat cacagaaccc atattataat attggttctt tattcttttt
351 tagaataaaa tttgaaatag aaatgatttt gaaataaaaa attcagaatt
401 tttttagaat tattgtgaat ccattccaat cgaatattta gtaatcaaat
451 ccttcaattc aaagttttga ggtctttaaa aaagtggatt aatcggacga
501 ggacaaagag agagtcccat tctacatgtc aatactgaca acaatgaaat
551 ttctagtaaa aggaaaatcc gtcgacttta taagtcgtga gggttcaagt
601 ccctctatcc cc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
612 |
593 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.