Match details
Record ID:
NRN_CQ945872
Database:
nrnl1
Go to original record
Description:
Sequence 34 from Patent WO2004099447. Sequence 34 from patent US 7288643. Corn Event TC1507 and Methods for Detection Thereof. Sequence 34 from patent US 7417132. Sequence 34 from patent US 7435807. Sequence 34 from patent US 7449564. Sequence 34 from patent US 7514544. Sequence 34 from patent US 7989607.
Taxon:
unidentified
Original size:
201 bp
Patents:
WO2004099447 (lens , espacenet )
US7288643 (lens , espacenet )
US2005039226 (lens , espacenet )
JP2006525028 (lens , espacenet )
US7417132 (lens , espacenet )
US2008015346 (lens , espacenet )
US7435807 (lens , espacenet )
US7435807 (lens , espacenet )
US7449564 (lens , espacenet )
US2008132690 (lens , espacenet )
US7514544 (lens , espacenet )
US2008051569 (lens , espacenet )
US7989607 (lens , espacenet )
View other 1 match for this record
View other 1741 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
15
122
+
108 bp
1 cgcggtttgt gatatcgtta accattacat tgagacgtct acagtgaact
51 ttaggacaga gccacaaaca ccacaagagt ggattgatga tctagagagg
101 ttgcaaga
View other 1557 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
22 bp
0
0
1
22
4.75e-10
primerB
100.0
25 bp
0
0
108
84
1.20e-11
probe
100.0
29 bp
0
0
53
81
8.17e-14
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.