Match details
| Record ID: | HW810106.1 | |
|---|---|---|
| Database: | emblrelpat | Go to original record |
| Description: | JP 2014534240-A/15: METHODS AND PRODUCTS FOR INCREASING FRATAXIN LEVELS AND USES THEREOF. | |
| Taxon: | Xanthomonas campestris | |
| Original size: | 5439 bp | |
| Patents: | JP2014534240 (lens, espacenet) | |
View other 1 match for this record
| Method: | QL-ELE-00-002 | Go to GMOMETHODS record |
|---|---|---|
| View in JRC GMO-Matrix | ||
| Description: | Qualitative PCR method for detection of Neomycin phosphotransferase II gene (ISO/FDIS 21569:2005). | |
| Target: | nptII | |
View other 57284 matches for this method
Predicted amplification details:
| Mismatches | Gaps | From | To | Strand | Amplicon size |
|---|---|---|---|---|---|
| 0 | 0 | 3041 | 3249 | - | 209 bp |
| Amplicon: | 209 bp |
|---|
1 CTCACCTTGC TCCTGCCGAG AAAGTATCCA TCATGGCTGA TGCAATGCGG 51 CGGCTGCATA CGCTTGATCC GGCTACCTGC CCATTCGACC ACCAAGCGAA 101 ACATCGCATC GAGCGAGCAC GTACTCGGAT GGAAGCCGGT CTTGTCGATC 151 AGGATGATCA AGAGCATCAG GGGCTCGCGC CAGCCGAACT GTTCGCCAGG 201 CTCAAGGCG
View other 103 matches with an identical amplicon
Primers alignment:
| Primer/Probe | % Identity | Length | Mismatches | Gaps | From | To | Score |
|---|---|---|---|---|---|---|---|
| primerA | 100.0 | 21 bp | 0 | 0 | 3249 | 3229 | 1.47e-08 |
| primerB | 100.0 | 21 bp | 0 | 0 | 3041 | 3061 | 1.47e-08 |
Related publications:
- Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
- Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.