Match details
| Record ID: | AR232930.1 | |
|---|---|---|
| Database: | emblrelpat | Go to original record |
| Description: | Sequence 1 from patent US 6455759. | |
| Taxon: | unidentified | |
| Original size: | 4544 bp | |
| Patents: | US6455759 (lens, espacenet) | |
View other 9 matches for this record
| Method: | QL-ELE-00-017 | Go to GMOMETHODS record |
|---|---|---|
| View in JRC GMO-Matrix | ||
| Description: | Qualitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (Barbau-Piednoir et al., 2014). | |
| Target: | CaMV P-35S | |
View other 7323 matches for this method
Predicted amplification details:
| Mismatches | Gaps | From | To | Strand | Amplicon size |
|---|---|---|---|---|---|
| 0 | 0 | 337 | 411 | + | 75 bp |
| Amplicon: | 75 bp |
|---|
1 AAAGCAAGTG GATTGATGTG ATATCTCCAC TGACGTAAGG GATGACGCAC 51 AATCCCACTA TCCTTCGCAA GACCC
View other 5330 matches with an identical amplicon
Primers alignment:
| Primer/Probe | % Identity | Length | Mismatches | Gaps | From | To | Score |
|---|---|---|---|---|---|---|---|
| primerA | 100.0 | 23 bp | 0 | 0 | 337 | 359 | 9.10e-10 |
| primerB | 100.0 | 20 bp | 0 | 0 | 411 | 392 | 4.49e-08 |
Related publications:
- Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
- Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.