European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 12 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB531017.1 nt Synthetic construct SBA-S-TM2 gene ... 1296 bp synthetic construct QT-TAX-GM-020 102 bp View
CP126427.1 nt Glycine max cultivar Williams 82 ch... 54744224 bp Glycine max QT-TAX-GM-020 102 bp View
DI201814.1 emblrelpat KR 1020110126306-A/54: A method for... 2152 bp artificial sequences QT-TAX-GM-020 102 bp View
DI435822.1 emblrelpat KR 1020140135576-A/2: Standard Plas... 1278 bp synthetic construct QT-TAX-GM-020 102 bp View
DM163293.1 emblrelpat A method for binding a protein to a... 1296 bp synthetic construct QT-TAX-GM-020 102 bp View
HJ177999.1 emblrelpat Sequence 63 from patent US 8343727. 1296 bp unidentified QT-TAX-GM-020 102 bp View
JX434027.1 nt GM reference vector pTLH10, partial... 3360 bp GM reference vector pTLH10 QT-TAX-GM-020 102 bp View
JX434028.1 nt GM reference vector pTLE8, partial ... 3664 bp GM reference vector pTLE8 QT-TAX-GM-020 102 bp View
K00821.1 nt Soybean lectin (Le1) gene, complete... 2152 bp Glycine max QT-TAX-GM-020 102 bp View
KH534075.1 emblrelpat Sequence 2 from patent US 9562267. 1278 bp unidentified QT-TAX-GM-020 102 bp View
KH534098.1 emblrelpat Sequence 25 from patent US 9562267. 8605 bp unidentified QT-TAX-GM-020 102 bp View
NRN_DM163293 nrnl1 A method for binding a protein to a... 1296 bp unidentified QT-TAX-GM-020 102 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.