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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 37 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB531017.1 nt Synthetic construct SBA-S-TM2 gene ... 1296 bp synthetic construct QT-TAX-GM-007 118 bp View
AX033509.1 emblrelpat Sequence 17 from Patent DE19906169. 250 bp synthetic construct QT-TAX-GM-007 118 bp View
BD170162.1 emblrelpat WO 2002034943-A/75: Method of quant... 239 bp synthetic construct QT-TAX-GM-007 118 bp View
BD170163.1 emblrelpat WO 2002034943-A/76: Method of quant... 528 bp synthetic construct QT-TAX-GM-007 118 bp View
BD249874.1 emblrelpat JP 2002536024-A/17: Test kit and me... 250 bp synthetic construct QT-TAX-GM-007 118 bp View
BD295560.1 emblrelpat WO 2003027283-A/1: Nucleic acid fra... 346 bp synthetic construct QT-TAX-GM-007 139 bp View
BD295561.1 emblrelpat WO 2003027283-A/2: Nucleic acid fra... 402 bp synthetic construct QT-TAX-GM-007 139 bp View
CP126427.1 nt Glycine max cultivar Williams 82 ch... 54744224 bp Glycine max QT-TAX-GM-007 118 bp View
DD278614.1 emblrelpat The reagent for measuring quantity ... 128 bp unidentified QT-TAX-GM-007 118 bp View
DD278615.1 emblrelpat The reagent for measuring quantity ... 128 bp unidentified QT-TAX-GM-007 118 bp View
DD435966.1 emblrelpat Method for quantitative detection o... 528 bp synthetic construct QT-TAX-GM-007 118 bp View
DI201814.1 emblrelpat KR 1020110126306-A/54: A method for... 2152 bp artificial sequences QT-TAX-GM-007 118 bp View
DI435822.1 emblrelpat KR 1020140135576-A/2: Standard Plas... 1278 bp synthetic construct QT-TAX-GM-007 118 bp View
DM163293.1 emblrelpat A method for binding a protein to a... 1296 bp synthetic construct QT-TAX-GM-007 118 bp View
GX183323.1 emblrelpat Sequence 75 from patent US 7709232. 239 bp unidentified QT-TAX-GM-007 118 bp View
GX183324.1 emblrelpat Sequence 76 from patent US 7709232. 528 bp unidentified QT-TAX-GM-007 118 bp View
HJ177999.1 emblrelpat Sequence 63 from patent US 8343727. 1296 bp unidentified QT-TAX-GM-007 118 bp View
HW430036.1 emblrelpat JP 2014033658-A/12: A method for pr... 118 bp Glycine max QT-TAX-GM-007 118 bp View
HW430049.1 emblrelpat JP 2014033658-A/25: A method for pr... 874 bp synthetic construct QT-TAX-GM-007 118 bp View
HW430050.1 emblrelpat JP 2014033658-A/26: A method for pr... 3572 bp synthetic construct QT-TAX-GM-007 118 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.