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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GU943558.1 nt Agalinis decemloba isolate 1ADEL3VA... 1065 bp Agalinis decemloba QL-PLN-00-007 552 bp View
GU943559.1 nt Agalinis acuta isolate 161AACRCRI t... 1129 bp Agalinis acuta QL-PLN-00-007 552 bp View
GU943560.1 nt Agalinis decemloba isolate 45ADEL1V... 1213 bp Agalinis decemloba QL-PLN-00-007 552 bp View
GU943561.1 nt Agalinis decemloba isolate 19ADEWCN... 1150 bp Agalinis decemloba QL-PLN-00-007 552 bp View
GU943563.1 nt Agalinis obtusifolia isolate 10AOBB... 1585 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
GU943564.1 nt Agalinis obtusifolia isolate 177AOB... 1635 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
GU943565.1 nt Agalinis obtusifolia isolate 169AOB... 1619 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
GU943567.1 nt Agalinis setacea isolate 100ASEFCVA... 1170 bp Agalinis setacea QL-PLN-00-007 551 bp View
GU943568.1 nt Agalinis tenuifolia isolate 46ATUMD... 1530 bp Agalinis tenuifolia QL-PLN-00-007 560 bp View
GU943569.1 nt Agalinis tenella isolate 79ATEBCGA ... 1141 bp Agalinis tenella QL-PLN-00-007 552 bp View
GX327302.1 emblrelpat Sequence 21377 from patent US 7750207. 2870 bp unidentified QL-PLN-00-007 532 bp View
GX544476.1 emblrelpat Sequence 58501 from patent US 7790958. 36527 bp unidentified QL-PLN-00-007 614 bp View
GX568797.1 emblrelpat Sequence 82822 from patent US 7790958. 4745 bp unidentified QL-PLN-00-007 615 bp View
GX914744.1 emblrelpat Sequence 10652 from patent US 7868149. 63097 bp unidentified QL-PLN-00-007 616 bp View
GX917680.1 emblrelpat Sequence 13588 from patent US 7868149. 8037 bp unidentified QL-PLN-00-007 615 bp View
GX918448.1 emblrelpat Sequence 14356 from patent US 7868149. 23390 bp unidentified QL-PLN-00-007 615 bp View
GX922499.1 emblrelpat Sequence 18407 from patent US 7868149. 16684 bp unidentified QL-PLN-00-007 615 bp View
GX923123.1 emblrelpat Sequence 19031 from patent US 7868149. 12880 bp unidentified QL-PLN-00-007 615 bp View
GX926227.1 emblrelpat Sequence 22135 from patent US 7868149. 67934 bp unidentified QL-PLN-00-007 615 bp View
GX929536.1 emblrelpat Sequence 25444 from patent US 7868149. 1428 bp unidentified QL-PLN-00-007 614 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.