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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ353966.1 nt Alopecurus magellanicus voucher Gil... 1789 bp Alopecurus magellanicus QL-PLN-00-007 615 bp View
DQ353967.1 nt Dupontia fisheri voucher Gillespie ... 1797 bp Dupontia fisheri QL-PLN-00-007 613 bp View
DQ353968.1 nt Dupontia fisheri voucher Gillespie ... 1774 bp Dupontia fisheri QL-PLN-00-007 613 bp View
DQ353969.1 nt Arctagrostis latifolia voucher Gill... 1808 bp Arctagrostis latifolia QL-PLN-00-007 620 bp View
DQ353970.1 nt Bellardiochloa variegata voucher US... 1832 bp Bellardiochloa variegata QL-PLN-00-007 620 bp View
DQ353972.1 nt Nicoraepoa subenervis voucher Soren... 1805 bp Nicoraepoa subenervis QL-PLN-00-007 620 bp View
DQ353973.1 nt Nicoraepoa pugionifolia voucher Sor... 1888 bp Nicoraepoa pugionifolia QL-PLN-00-007 620 bp View
DQ353976.1 nt Arctopoa tibetica voucher Soreng & ... 1840 bp Arctopoa tibetica QL-PLN-00-007 618 bp View
DQ353977.1 nt Arctopoa eminens voucher Soreng 602... 1807 bp Arctopoa eminens QL-PLN-00-007 618 bp View
DQ353978.1 nt Poa marcida voucher Soreng & Soreng... 1882 bp Poa marcida QL-PLN-00-007 611 bp View
DQ353983.1 nt Poa annua voucher Gillespie 6284 CA... 1752 bp Poa annua QL-PLN-00-007 616 bp View
DQ353984.1 nt Poa supina voucher Soreng & Cayouet... 1829 bp Poa supina QL-PLN-00-007 616 bp View
DQ353985.1 nt Poa alpina voucher Gillespie 6299 C... 1759 bp Poa alpina QL-PLN-00-007 563 bp View
DQ353986.1 nt Poa alpina voucher Gillespie et al.... 1764 bp Poa alpina QL-PLN-00-007 563 bp View
DQ353987.1 nt Poa diaphora var. songarica voucher... 1701 bp Poa diaphora var. songarica QL-PLN-00-007 612 bp View
DQ353988.1 nt Poa diaphora var. songarica voucher... 1726 bp Poa diaphora var. songarica QL-PLN-00-007 612 bp View
DQ353989.1 nt Poa secunda subsp. juncifolia vouch... 1839 bp Poa secunda subsp. juncifolia QL-PLN-00-007 611 bp View
DQ353990.1 nt Poa hartzii subsp. hartzii voucher ... 1790 bp Poa hartzii subsp. hartzii QL-PLN-00-007 611 bp View
DQ353991.1 nt Poa secunda subsp. secunda voucher ... 1884 bp Poa secunda subsp. secunda QL-PLN-00-007 611 bp View
DQ353992.1 nt Poa ammophila voucher Gillespie 585... 1842 bp Poa ammophila QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.